Substrate preparation for Agaricus bisporus cultivation

ABSTRACT: Mushroom cultivation needs a selected organic substrate obtained during a composting process which is, in some aspects, quite different from the classical one. The aim is to analyse chemical and physical aspects of a composting process for mushroom cultivation in order to point out the peculiar characteristics, which enable a much faster preparation of the substrate. Raw materials were straw, chicken manure, gypsum and ammonium sulphate. In a very short time (11-13 days) the process led to a well-stabilised biomass, as it was shown by humification indexes, C/N ratio trend, organic carbon oxidation and ammonia nitrogen concentration decrease. In comparison to the classical composting procedure, a lower level of ammonia nitrogen and an organic nitrogen enrichment were present in the compost for mushroom cultivation. In addition, the high level of the substrate moisture, more than 75%, well above the limit normally recommended, has probably favoured the microbial growth rendering the process more efficient and faster

Duplication of the dystroglycan gene in most branches of teleost fish

<p>Abstract</p> <p>Background</p> <p>The dystroglycan (DG) complex is a major non-integrin cell adhesion system whose multiple biological roles involve, among others, skeletal muscle stability, embryonic development and synapse maturation. DG is composed of two subunits: α-DG, extracellular and highly glycosylated, and the transmembrane β-DG, linking the cytoskeleton to the surrounding basement membrane in a wide variety of tissues. A single copy of the DG gene (<it>DAG1</it>) has been identified so far in humans and other mammals, encoding for a precursor protein which is post-translationally cleaved to liberate the two DG subunits. Similarly, <it>D. rerio </it>(zebrafish) seems to have a single copy of <it>DAG1</it>, whose removal was shown to cause a severe dystrophic phenotype in adult animals, although it is known that during evolution, due to a whole genome duplication (WGD) event, many teleost fish acquired multiple copies of several genes (paralogues).</p> <p>Results</p> <p>Data mining of pufferfish (<it>T. nigroviridis </it>and <it>T. rubripes</it>) and other teleost fish (<it>O. latipes </it>and <it>G. aculeatus</it>) available nucleotide sequences revealed the presence of two functional paralogous DG sequences. RT-PCR analysis proved that both the DG sequences are transcribed in <it>T. nigroviridis</it>. One of the two DG sequences harbours an additional mini-intronic sequence, 137 bp long, interrupting the uncomplicated exon-intron-exon pattern displayed by <it>DAG1 </it>in mammals and <it>D. rerio</it>. A similar scenario emerged also in <it>D. labrax </it>(sea bass), from whose genome we have cloned and sequenced a new DG sequence that also harbours a shorter additional intronic sequence of 116 bp. Western blot analysis confirmed the presence of DG protein products in all the species analysed including two teleost Antarctic species (<it>T. bernacchii </it>and <it>C. hamatus</it>).</p> <p>Conclusion</p> <p>Our evolutionary analysis has shown that the whole-genome duplication event in the Class Actinopterygii (ray-finned fish) involved also <it>DAG1</it>. We unravelled new important molecular genetic details about fish orthologous DGs, which might help to increase the current knowledge on DG expression, maturation and targeting and on its physiopathological role in higher organisms.</p

An Immunological Analysis of Dystroglycan Subunits: Lessons Learned from a Small Cohort of Non-Congenital Dystrophic Patients

The dystroglycan (DG) expression pattern can be altered in severe muscular dystrophies. In fact, some congenital muscular dystrophies (CMDs) and limb-girdle muscular dystrophies (LGMDs) are caused by point mutations identified in six glycosyltransferase genes which are likely to target different steps along the posttranslational “O-glycosylation route” leading to a fully decorated and functional α-DG subunit. Indeed, hypoglycosylation of α-DG is thought to represent a major pathological event, in that it could reduce the DG’s ability to bind the basement membrane components, thus leading to sarcolemmal instability and necrosis. In order to set up an efficient standard immunological protocol, taking advantage of a wide panel of antibodies, we have analyzed the two DG subunits in a small cohort of adult dystrophic patients, whom an extensive medical examination had already clinically classified as affected by LGMD (5), Miyoshi (1) or distal (1) myopathy. Immunofluorescence analysis of skeletal muscle tissue sections revealed a proper sarcolemmal localization of the DG subunits in all the patients analyzed. However, Western blot analysis of lectin enriched skeletal muscle samples revealed an abnormal glycosylation of α-DG in two patients. Our work reinforces the notion that a careful immunological and biochemical analysis of the two DG subunits should be always considered as a prerequisite for the identification of new putative cases of dystroglycanopathy

Dissolved Inorganic Nutrients in the Western Mediterranean Sea (2004-2017)

Abstract. Long-term time-series are a fundamental prerequisite to understand and detect climate shifts and trends. Understanding the complex interplay of changing ocean variables and the biological implication for marine ecosystems requires extensive data collection for monitoring and hypothesis testing and validation of modelling products. In marginal seas, such as Mediterranean Sea, there are still monitoring gaps, both in time and in space. To contribute filling these gaps, an extensive dataset of dissolved inorganic nutrients profiles (nitrate, NO3; phosphate, PO4 ; and silicate, SiO2) have been collected between 2004 and 2017 in the Western Mediterranean Sea and subjected to quality control techniques to provide to the scientific community a publicly available, long-term, quality controlled, internally consistent biogeochemical data product. The database includes 27 870 stations of dissolved inorganic nutrients sampled during 24 cruises, including temperature and salinity. Details of the quality control (primary and secondary quality control) applied are reported. The data are available in PANGAEA (https://doi.pangaea.de/10.1594/PANGAEA.904172, Belgacem et al. 2019) Keywords: Mediterranean Sea, Dissolved Inorganic Nutrient, biogeochemistr

Hybrid multiple-site mass closure and source apportionment of PM2.5 and aerosol acidity at major cities in the Po Valley

This study investigates the major chemical components, particle-bound water content, acidity (pH), and major potential sources of PM2.5 in major cities (Belluno, Conegliano, Vicenza, Mestre, Padua, and Rovigo) in the eastern end of the Po Valley. The measured PM2.5 mass was reconstructed using a multiple-site hybrid chemical mass closure approach that also accounts for aerosol inorganic water content (AWC) estimated by the ISORROPIA-II model. Annually, organic matter accounted for 31-45% of the PM2.5 at all sites, followed by nitrate (10-19%), crustal material (10-14%), sulfate (8-10%), ammonium (5-9%), elemental carbon (4-7%), other inorganic ions (3-4%), and trace elements (0.2-0.3%). Water represented 7-10% of measured PM2.5. The ambient aerosol pH varied from 1.5 to 4.5 with lower values in summer (average in all sites 2.2±0.3) and higher in winter (3.9±0.3). Six major PM2.5 sources were quantitatively identified with multiple-site positive matrix factorization: secondary sulfate (34% of PM2.5), secondary nitrate (30%), biomass burning (17%), traffic (11%), re-suspended dust (5%), and fossil fuel combustion (3%). Biomass burning accounted for ∼90% of total PAHs. Inorganic aerosol acidity was driven primarily by secondary sulfate, fossil fuel combustion (decreasing pH), secondary nitrate, and biomass burning (increasing pH). Secondary nitrate was the primary driver of the inorganic AWC variability. A concentration-weighted trajectory (multiple-site) analysis was used to identify potential source areas for the various factors and modeled aerosol acidity. Eastern and Central Europe were the main source areas of secondary species. Less acidic aerosol was associated with air masses originating from Northern Europe owing to the elevated presence of the nitrate factor. More acidic particles were observed for air masses traversing the Po Valley and the Mediterranean, possibly due to the higher contributions of fossil fuel combustion factor and the loss of nitric acid due to its interaction with coarse sea-salt particles

Late time response analysis in UWB radar for concealed weapon detection : feasibility study

Remote detection of body-worn concealed weapons or explosives (CWE) is a field of ongoing research. In this Thesis the feasibility of CWE detection by using the UWB radar is explored. The CWE detection is based on the analysis of the Late Time Response (LTR) of the human which has been illuminated by the UWB signal. A specific set of LTR parameters characterizes the target signature. Therefore the existence of a CWE attached on the human body will influence the LTR characteristics and give the composite object i.e. human-CWE a different signature than the simple object i.e. human. The CWE detection methodology is verified by theoretical analysis, modelling and extensive laboratory experimentation. Investigation of the way the LTR parameters are influenced by the existence of the CWE signifies the differences of the LTR signature between the human and human-CWE. So the resolution of the differences in the LTR of a human with and without a CWE as the main objective of the research, are presented in the Thesis. The results verify that CWE detection with the use of LTR is feasible under the experimental conditions presented. Furthermore consideration of all possible detection scenarios is out of the scope of this Thesis.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Climatological distribution of dissolved inorganic nutrients in the western Mediterranean Sea (1981–2017)

The Western MEDiterranean Sea BioGeochemical Climatology (BGC-WMED, https://doi.org/10.1594/PANGAEA.930447) (Belgacem et al., 2021) presented here is a product derived from quality-controlled in situ observations. Annual mean gridded nutrient fields for the period 1981–2017 and its sub-periods 1981–2004 and 2005–2017 on a horizontal 1/4∘ × 1/4∘ grid have been produced. The biogeochemical climatology is built on 19 depth levels and for the dissolved inorganic nutrients nitrate, phosphate and orthosilicate. To generate smooth and homogeneous interpolated fields, the method of the variational inverse model (VIM) was applied. A sensitivity analysis was carried out to assess the comparability of the data product with the observational data. The BGC-WMED was then compared to other available data products, i.e., the MedBFM biogeochemical reanalysis of the Mediterranean Sea and the World Ocean Atlas 2018 (WOA18) (its biogeochemical part). The new product reproduces common features with more detailed patterns and agrees with previous records. This suggests a good reference for the region and for the scientific community for the understanding of inorganic nutrient variability in the western Mediterranean Sea, in space and in time, but our new climatology can also be used to validate numerical simulations, making it a reference data product.</p

Needs and gaps in optical underwater technologies and methods for the investigation of marine animal forest 3D-structural complexity

Marine animal forests are benthic communities dominated by sessile suspension feeders (such as sponges, corals, and bivalves) able to generate three-dimensional (3D) frameworks with high structural complexity. The biodiversity and functioning of marine animal forests are strictly related to their 3D complexity. The present paper aims at providing new perspectives in underwater optical surveys. Starting from the current gaps in data collection and analysis that critically limit the study and conservation of marine animal forests, we discuss the main technological and methodological needs for the investigation of their 3D structural complexity at different spatial and temporal scales. Despite recent technological advances, it seems that several issues in data acquisition and processing need to be solved, to properly map the different benthic habitats in which marine animal forests are present, their health status and to measure structural complexity. Proper precision and accuracy should be chosen and assured in relation to the biological and ecological processes investigated. Besides, standardized methods and protocols are strictly necessary to meet the FAIR (findability, accessibility, interoperability, and reusability) data principles for the stewardship of habitat mapping and biodiversity, biomass, and growth data

Chemical analyses of spring waters and factor analysis to monitor the functioning of a karstic system. The role of precipitations regimen and anthropic pressures

An approach is presented to study the functioning of a karstic massif and assess the adverse effects of the anthropogenic pressure by monitoring some water chemical and physical parameters of its main springs. The approach has been applied to the Sette Comuni Plateau (Veneto Region, Italy) hosting a well developed karstic system, whose aquifer presents high vulnerability and undergoes a relevant anthropogenic pressure. The Oliero springs, amongst the largest karstic springs in Europe, are the main water output of the plateau. Electrical conductivity, pH, dissolved O2, hardness, alkalinity, chemical oxygen demand, total suspended solids, ionic species (NH4+, NO3−, NO2−, PO43−, SO42−, Cl−, F−), elements (CrIII, CrVI, Mn, Fe, Ni, Cu, Zn, As, Cd, Hg, Pb), and some chlorinated solvents were monitored for one year. This study presents the application of a factor analysis on the water parameters enabling the identification of the dominant chemical and biological processes and pollution sources affecting the karstic system. Results show four factors which are interpreted as karstification, photosynthesis, storm flow pollution and anions. Finally, by associating metals, chemical oxygen demand and total suspended solids with the amount of rainfall in the 48 h before samplings, further detailed information to the fast response of the aquifer to precipitation events was detected and interpreted according to the factor analysis results. The proposed approach, by providing information on the functioning of the aquifer, may help the management of the karstic plateau and is easily adaptable to similar environments